UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout...site. You can also check out the UpSetR shiny app. Here is the source code&n...1976 days ago
plumber:An R package that converts your existing R code to a web API
plumber allows you to create a REST API by merely decorating your existing R source code with special comments. Take a look at an example. # plumber.R #* Echo back the input #* @param msg Th...1932 days ago
jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
jackalope simply and efficiently simulates (i) variants from reference genomes and (ii) reads from both Illumina and Pacific Biosciences (PacBio) platforms. It can eith...1797 days ago
The Extensive de novo TE Annotator (EDTA)
The EDTA package was designed to filter out false discoveries in raw TE candidates a...non-redundant TE library for whole-genome TE annotations. Selection of initial search programs were based on benckm...1784 days ago
Retrieving Taxonomic Information with R
This vignette will introduce users to the retrieval of taxonomic information with myTAI. The taxonomy() function implemented in myTAI relies on...1763 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
chromoMap provides interactive, configurable and elegant graphics visualization of chromosomes or chromosomal regions allowing users to map chromosome elements (li...1754 days ago
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Kalign: fast multiple sequence alignment program for biological sequences.
Kalign is a fast multiple sequence alignment program for biological sequences. Align sequences and output the alignment in MSF format: kalign -i BB11001.tfa -f msf -...1699 days ago
Gooey: Turn (almost) any Python command line program into a full GUI application with one line
Turn (almost) any Python command line program into a full GUI application with one line The easiest way to install Gooey is via pip pip install Gooey Alterna...1699 days ago
Seq: A high-performance, Pythonic language for bioinformatics
Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible synt...Seq makes writing high-performance genomics software as easy as writing Python code,...1677 days ago