Results for "data mining"
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Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or ...elocity and single-nuclei RNA-seq analsis Quantify data from numerous technologies su...hnologies and protocols. Process feature barcoding data s...1177 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for compar...p researchers gain new insights into the underlying data. Such visualizations typicall...tion of additional information such as experimental data o...2715 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best al...ility: YAHA is currently supported on 64-bit Linux systems. Binaries and sample data a...
2713 days ago
- BioDownloader is a program for downloading and/or updating files from ftp...y designed to deal with bioinformatics data files and servers: optimized to work with vast amount of data and very large file sets (~ 1...onization needs, including the Protein Data B...
2676 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each element of data. Instead, MCE follows a bank q...el. Imagine the line being the data and bank-tellers the parallel...e module. MCE::Queue exchanges data via the core engine to enable...d in 1.506, allows one to pass data f...2702 days ago
iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It pr...to the precomputed trees, users can upload and display personal trees and data, using the 'Data u...2702 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new featu...xtensive DNA polymorphism analyses on large datasets. Among other features, th...methods allow for: (i) analyses on multiple data f...2696 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running C...ainter, finestructure and ChromoPainter for RAD tag data used for non-model organisms....important haplotype information from dense genotype data....2689 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction....e of each cancer type being over 200. The resulting data consisting of genetic variant...TCGA sources or any in-house studies as long as the data i...
2686 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular...f genomes, with a focus on handling genome assembly data. The application is available...es, draft genomes or even raw, unassembled sequence data....
2685 days ago
