Results for "pe"
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...ing interactions between DNA regions, e.g., ChIA-PET and HiC, can generate genome...interaction datasets. To fill this gap, we developed a web-based application, QuI...e at http://quin.jax.org QuIN is developed in Java and JavaScript, util...2929 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...ms designed for this task have been relatively slow and computationally expensive, forcing researchers to...Kraken classifies 100 base pair reads at a rate of over 4.1 million reads per minute, 909 times faster tha...2929 days ago
- ...in the protein alignment. The search can process up to millions of reads per minute using, for example, o...onomic classification for metagenomics with Kaiju. Nat. Commun. 7:11257 (open access).
2929 days ago
- ...for browsing, blasting, probing, and downloading. The data and tools presented by greengenes can assist the researcher in choosing phylogenetically specific probes, interpreting mic...
2927 days ago
- ...d through comprehensive literature curation of experimentally-derived and computa...ctions. The current release contains 4,433,071 experimentally-derived and 3,605,1...ionally-predicted interactions in 5 organisms. Experimental data cover both high...
2923 days ago
Bioinformatics tools and software
...U sequences and improved diversity measures. UCHIME >Chimeric sequence detection. PILER >De novo genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial genomes. ...2921 days ago
- ...be used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Ot...eneral Public License (GPL). See the user manual or the paper for more information ab...
2913 days ago
- ...ata. It also produces editable scaffold maps, allowing either to build gapped scaffolds or usable as a com...es 4 subcommands: dumpconfig generates a configuration file that notably specifies the average insert size...
2913 days ago
- ...clustering and networks Supports metadata MEGAN parses many different types of input Why use MEGAN6?...nbsp;hundreds of millions of sequencing reads. Blast-like analysis can be performed using DIAMOND. Compre...
2902 days ago
- The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release
2900 days ago
