Flye: Fast and accurate de novo assembler for single molecule sequencing reads
Flye is a de novo assembler for long and noisy reads, such as those produced by PacBi...After the initial assembly, Flye performs an extra repeat classification and analysis step to improve the structura...2244 days ago
2217 days ago
Ranbow: a haplotype assembler for polyploid genomes
...g, Ranbow utilizes the assembled haplotypes to improve the accuracy of variant calling results and to infer...pes by gold standard (long) reads ranbow phylo: for the phylogenetic analysis2216 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
Gblocks eliminates poorly aligned positions and divergent regions of a DNA or protein alignment so that it becomes more suitable for phylogenetic analysis. This server implements the m...2215 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a compu...nstructing a "full length" sequence for functional analysis, or at least to obtain neighb...gment for SNP discovery and linkage disequilibrium analysis. The confidence of assembling...2207 days ago
bpRNA: large-scale automated annotation and analysis of RNA secondary structure
bpRNA, a novel annotation tool capable of parsing RNA structures, including complex p...en in perl and requires the Graph perl module. Several additional scripts for analysis are included. The source code...2226 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast...2225 days ago
2220 days ago
NAViGaTOR: Network Analysis, Visualization and Graphing Toronto
NAViGaTOR – Network Analysis, Visualization, & Graphing TORonto is a software system for scaleabl...scaleability, extends input/output options, brings new network views and analysis algorithms. http://142.150...2185 days ago
RNA-seq Analysis Workshop Course Materials
RNAseq can be roughly divided into two "types": Reference genome-based - an assembled genome exists for a species for which an RNAseq experiment is performed. It allo...2184 days ago