Results for "454 data"
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BRIG is a free cross-platform (Windows/Mac/Unix) applica...of genomes, with a focus on handling genome assembly data. The application is available...mes, draft genomes or even raw, unassembled sequence data. BRIG also accepts SAM-forma...2689 days ago
- This sockeye software uses the Ensembl database project to import sequence and annotatio...ort their own custom sequence and annotation data. Individual annotation object...By using the Java3D API to visualize genomic data in a 3D environment, we are a...
2688 days ago
- Circos plot tool (J-Circos) that is an interac..., as well as being able to dynamically add data to the figure, and providing information for specific data points using mouse hover disp...s (Windows, MacOS, Linux). Users can input data into J-Circos using flat data...
2688 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a...an be used for whole genome shotgun (WGS) sequencing data. They also show applicability...le dosage estimation. Results for simulated and real datasets are discussed and provide...2682 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
Strand Life Sciences announces the release...The first theme is large-scale RNA-Seq data analysis. Current cross-cohor...ing the accuracy and efficiency of NGS data analysis. Customers can look...based diagnostics and clinical genomic data interpretation using a strong...2441 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2678 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contain...ted pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454...2678 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, w...g sets were derived to improve the performance, both in runtime and quality for 454...2676 days ago
- CLgenomics is a standalone desktop software specifically designed for bacterial gen...ponsive exploration of bacterial genomes. To use CLgenomics, individual genome data (genome sequences + annotatio...
2674 days ago
CONCOCT: Clustering cONtigs with COverage and ComposiTion
A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. Warni...2672 days ago
