Japanese Multi Omics Reference Panel, jMorp
...ncluding the uncharacterized ones, and several hundreds of proteins until now. https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkx978/45633062386 days ago
2382 days ago
Recovery of complete genomes from metagenomes
...sp;Adam Skarshewski, Gene W. Tyson, Kåre L. Nielsen and Per .H. Nielsen Nature Biotechnology 2013, doi: 10.1038/nbt.25792381 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
...y Vyahhi, Son K. Pham, Pavel Pevzner. From de Bruijn Graphs to Rectangle Graphs for Genome Assembly, Lecture Notes in Bioinformatics 7534 (2012), pp. 249-261.2380 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes reported in: Dudchenko et al., De novo assembly of the Aedes aegypti geno...2380 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
...in the input format containing uncorrected reads. https://github.com/biointec/jabba/wiki https://almob.biomedcentral.com/articles/10.1186/s13015-016-0075-72042 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
...(http://dx.doi.org/10.1093/bioinformatics/btu392) is easy to install/run/configure supports various types of dat HiSeq/MiSeq (100-500bp) Unitigs 454, ... proovread maps h...2372 days ago
2370 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
...es such as ENCODE, Roadmap Epigenomics, and GTEx by facilitating data integration and hypothesis generation. https://www.nature.com/articles/nmeth.45562367 days ago
mojolicious: a next generation web framework for the Perl programming language.
...bSocket client/server implementation with IPv6, TLS, SNI, IDNA, HTTP/SOCKS5 proxy, UNIX domain socket, Co...ented pure-Perl API with no hidden magic and no requirements besides Perl 5.24.0 (versions as old as 5.10...2365 days ago