Results for "CA"
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...analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary numbe...2869 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic informatio...stored in GenBank entries to graphical maps. The input text file ha...e format, whereas the output format can be chosen among several form...ome (chondriome). Nevertheless, you can upload any GenBank entry. Th...
2869 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which e...
2867 days ago
- Most variant calling pipelines result in files containing large quantities of variant information. The variant call format (vcf) is an inc...gnette ‘vcf data.’ These files are typically intended to be post-proces...
2866 days ago
- Faster, more accurate algorithms function prediction "GeneMANIA (Multiple Association Network Integration Algorithm)" have however been developed in recent years and are publicly available on the web, indicating the future direction of function prediction.
2863 days ago
- Recent technological progress has greatly facilitated&nbs...e (contigs) arranged in thousands of scaffolds instead of small number...he quality of such assemblies is critical for subsequent analysis.&nbs...s. In brief, our scripts create Cytoscape files to visualize transcri...
2861 days ago
GeneValidator - Identify problems with predicted genes
...identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST databases. The results produced can be used by biocurators and r...2859 days ago
- ...re the accuracy of different gene finding approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE will...rt codons will lead to wrong prediction of initial exons in most cases. http://genome.crg.es/cou...
2859 days ago
- Collections of few handy tools for bioinformatician http://molbiol-tools.ca/Convert.htm
2856 days ago
- ...acmd), PAML (including codeml and yn00) and KaKs_Calculator (including 10 substitution rate estimation methods). gKaKs can automatically detect and eli...ve not been well annotated. Look for KaKs calculation: https://github.com...
2856 days ago
