Results for "Genome Interpretation"
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Harvest is a suite of core-genome alignment and visualization tools for q...thousands of intraspecific microbial genomes, including variant calls, re...rees. Tools Parsnp - Core-genome alignment and analysis Gingr...AM. The Harvest suite for rapid core-genome alignme...2789 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map constructi...exons against all exons in other genomes and record significant align...have exons in all or most of the genomes), join...
2784 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number...hism data; (iv) visualizing sliding window results integrated with available genome annotat...2784 days ago
fineSTRUCTURE v2 & GLOBETROTTER
...er and FineSTRUCTURE for population inference. A GUI is available for interpretation. Download from the Do...odology for Chromosome Painting. It is not a facility to analyse your genome. Sorry if you were misled by the punc...2776 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Gen...AF) is being widley accepted and used to store variants detected. The Cancer Genome Atlas P...
2773 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The applicatio...and read coverage can be displayed for draft genomes; custo...
2773 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived fr...rearrangements, insertions or deletions of genome segments between species or s...nomic sequences, especially closely related genomes such a...
2772 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a...s with sequence homology along with their genome coordinates. Using a scoring...e large evolutionary conserved regions of genomes betwee...2772 days ago
- Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For ex...
2766 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic method that estimates the ploidy of any giv...rt findings regarding errors in sequencing. The method can be used for whole genome shotgun...2766 days ago
