Results for "Genome STRiP"
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Harvest is a suite of core-genome alignment and visualization tools for qu...thousands of intraspecific microbial genomes, including variant calls, re...trees. Tools Parsnp - Core-genome alignment and analysis Gingr...AM. The Harvest suite for rapid core-genom...2679 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map constructio...l exons against all exons in other genomes and record significant align...t have exons in all or most of the genom...
2673 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of...rphism data; (iv) visualizing sliding window results integrated with available genom...2673 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running ChromoPainter and FineSTRUCTUR...for methodology for Chromosome Painting. It is not a facility to analyse your genom...2666 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genom...(MAF) is being widley accepted and used to store variants detected. The Cancer Genom...
2663 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The applicatio...and read coverage can be displayed for draft genom...
2663 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from...he rearrangements, insertions or deletions of genome segments between species or s...genomic sequences, especially closely related genom...
2662 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a...rs with sequence homology along with their genome coordinates. Using a scoring...ne large evolutionary conserved regions of genom...2662 days ago
- Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genom...
2655 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic method that estimates the ploidy of any given...port findings regarding errors in sequencing. The method can be used for whole genom...2655 days ago
