Seal: SEquence ALignment evaluation suite
Seal is a comprehensive sequencing simulation and alignment tool evaluation suite....natively, generating an artificial reference genome based on input parameters (length,...imulating reads from random locations in the genome based o...2372 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation (Illumina) data. Input Jabba takes as inpu...2040 days ago
AliTV—interactive visualization of whole genome comparisons
AliTV, which provides interactive visualization of whole genome alignments. AliTV reads multiple whole genome alig...s and phylo- genetic information are supported. The user-friendly, web-browser based a...2365 days ago
mojolicious: a next generation web framework for the Perl programming language.
Back in the early days of the web, many people learned Perl because of a wonderful Perl library called CGI. I...used too, but may require additional CPAN modules to be installed) Fresh code based u...2363 days ago
2356 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" c...s is mainly due to the historical bias and lack of studies in many taxa. To date, ther...ovide a more comprehensive view of such phenomena. Based on these concerns, we developed...2352 days ago
RGFA: powerful and convenient handling of assembly graphs
RGFA, an implementation of the proposed GFA specification in Ruby. It allows the user to conveniently parse, edit...ssembly of a repetitive metagenomic fosmid insert was completed using a script based o...1625 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylog...2346 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools ...ealm of genome informatics) combined into a single binary named gt. It is based o...2337 days ago
Circoletto: visualizing sequence similarity with Circos
Circoletto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results. Onlin...2335 days ago