Results for "New Genome"
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Harvest is a suite of core-genome alignment and visualization tools...usands of intraspecific microbial genomes, including variant calls, re...s. Tools Parsnp - Core-genome alignment and analysis Gingr...The Harvest suite for rapid core-genome alignment and visualization o...2678 days ago
- Our basic strategy in building homolo...that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map constr...exons against all exons in other genomes and record significant align...have exons in all or most of the genomes), join neighboring (adjacent...
2672 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
...morphism data. Version 5 implements a number of new features and analytical metho...es on large datasets. Among other features, the newly implemented methods allow f...liding window results integrated with available genome annotations in the UCSC brows...2672 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for runnin...s for methodology for Chromosome Painting. It is not a facility to analyse your genome. Sorry if you were misled by...2665 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction...(MAF) is being widley accepted and used to store variants detected. The Cancer Genome Atlas Project has seqenced ov...
2662 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix)...ircular comparisons between a large number of genomes, with a focus on handling genome assembly data. The applicatio...and read coverage can be displayed for draft genomes; customized graphs and annot...
2662 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison resu...angements, insertions or deletions of genome segments between species or s...sequences, especially closely related genomes such as inter-species or int...
2661 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains o...syntenic genes found within complete genome sequences. As input, DAGchain...th sequence homology along with their genome coordinates. Using a scoring...rge evolutionary conserved regions of genomes between two organisms. Alter...2661 days ago
- Collectively, the bedtools utilities are a swiss-army knife o...of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools&n...
2654 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic method that e...eport findings regarding errors in sequencing. The method can be used for whole genome shotgun (WGS) sequencing data...2654 days ago
