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...rs and enhancers) at distal genomic locations can interact wit...ect gene expression levels. Genomic technologies for mapping i...infer distal gene targets of non-coding regulatory elements a...d mining. Currently, there is no software that can take full a...2928 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...raken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous pr...nce estimation programs, which only classify small subsets of metagenomic data. Using exact alignmen...2928 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing...to a taxon within the NCBI taxonomy by comparing it to a refere...either the available complete genomes from NCBI RefSeq or the mi...ase comprising 4821 microbial genomes. Kaiju can also be used fo...
2927 days ago
- ...presented by greengenes can assist the researcher in choosing phylogenetically specific probes, interpreting microarray results, and aligning/annotating novel sequences. If you are an A...
2926 days ago
- Records in 4DGenome are compiled through comprehensive literature curation of exp...able in a standardized file format. Records can be queried by genomic regions, gene names, organism, and detection technology.
2921 days ago
Bioinformatics tools and software
...ther marker genes. Highly accurate OTU sequences and improved diversity measures. UCHIME >Chimeric sequence detection. PILER >De novo genome repeat finder. PILER-C...2920 days ago
Fancy Oneliner for Bioinformatics !!
This webpage lists some of the one-liners that we frequently use in metagenomic analyses. You can click on the following links to browse through different topics. You can copy/paste...2917 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Other featu...
2912 days ago
- ...unction WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assemble...er includes 4 subcommands: dumpconfig generates a configuration file that notably specifies the average in...
2912 days ago
- ...a. All the interactive tools you need in one application. Taxonomic analysis using the NCBI taxonomy or a customized taxonomy su...all features are available through menus, toolbars and graphics. No scripting skills required. P...
2900 days ago
