Results for "Whole genome"
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Harvest is a suite of core-genome alignment and visualization tools...usands of intraspecific microbial genomes, including variant calls, re...s. Tools Parsnp - Core-genome alignment and analysis Gingr...The Harvest suite for rapid core-genome alignment and visualization o...2703 days ago
- Our basic strategy in building homology...that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map constr...exons against all exons in other genomes and record significant align...have exons in all or most of the genomes), join neighboring (adjacent...
2697 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. V...rphism data; (iv) visualizing sliding window results integrated with available genome annotations in the UCSC brows...2697 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running...for methodology for Chromosome Painting. It is not a facility to analyse your genome. Sorry if you were misled by...2690 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction....(MAF) is being widley accepted and used to store variants detected. The Cancer Genome Atlas Project has seqenced ov...
2687 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) ap...ircular comparisons between a large number of genomes, with a focus on handling genome assembly data. The applicatio...and read coverage can be displayed for draft genomes; customized graphs and annot...
2687 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wi...ents, insertions or deletions of genome segments between species or s...nces, especially closely related genomes such as inter-species or int...at sequence distributions in one whole-genome DNA sequence by compari...
2686 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchain...th sequence homology along with their genome coordinates. Using a scoring...rge evolutionary conserved regions of genomes between two organisms. Alter...2685 days ago
- Collectively, the bedtools utilities are a swiss-army knife of...of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools&n...
2679 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...ontig/scaffold based on its allele proportions. In the process, they report findings regarding errors in sequencing. The method can be used for whole genome shotgun (WGS) sequencing data...2679 days ago
