2992 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...represents knowledge which is important to know before diving head first into m...onment Retrieving and storing sequencing files (your own data or from publ...ng reads to a reference genome Manipulating SAM/BAM alignment files Visualizin...2992 days ago
mrFAST: Micro Read Fast Alignment Search Tool
...al variation and segmental duplications. mrFAST maps short reads with respect to user defined error threshold, including indels up to 4+4 bp. This manual, describes how to choose the parameter...2992 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise si...olecule sequencing (such as the PacBio RSII or Oxford Nanopore Min...tered. Canu is a hierachical assembly pipeline which runs in four...d corrected sequences Read the documentation New release...2975 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, t...need to understand, compare, and contrast the data becomes increasingly important....sary in such large and complex data sets. More at http://www.broadinstitute.o...2992 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
...alise genomic rearrangements. The detection is based on conditional exclusive compr...cally 20). For visualisation, Smash outputs a SVG image, with an ide...since that the main aim of the research is to know where the large-scale...2992 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacte...and archaeal genomes. It works by offering a standard software...keep pace with advancements in bioinformatics, it has become d...nomic features as well as the ability to add custom features t...2991 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly eff...hms to analyse NGS data sets. These methods enable the analysis of data sets o...data coming from any kind of organisms such as bacteria, plants, animals and e...2990 days ago
2978 days ago
2978 days ago