Results for "PA"
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...on Bambus scaffolder available as an open source package. While most other scaffo...th great flexibility in choosing the scaffolding parameters. In particular, Bambu...contig linking data other than specified by mate-pairs. Such sources of informati...2876 days ago
- ...uld hold true for a correct assembly (e.g., mate-pairs are aligned at the correct...as that were potentially mis-assembled, or to compare the quality of different as...od a particular assembly is correct. Home Page: VALET code reposi...
2839 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBank entries to graphical maps. The input text file has to be in GenBank flat file...
2876 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which e...
2874 days ago
- ...ese files are typically intended to be post-processed (i.e., filtered) as an attempt to remove false positives or otherwise problematic sites. The R package vcfR provides tools to f...
2873 days ago
- ...for subsequent analysis. Visualization and quality assessment of de novo genome assemblies Citation This software is fully described in the paper:Riba-Grognuz, Keller, Falq...
2868 days ago
GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST databases. The results pro...2866 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of different gene finding approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeS...
2866 days ago
- ...omputation pipeline developed and based on programs from four widely used packages: BLAT, BLASTALL (including bl2seq, formatdb and fastacmd), PAML (including codeml and yn00)...
2863 days ago
Sushi: An R/Bioconductor package for visualizing genomic data
Sushi: An R/Bioconductor package for visualizing genomic data2861 days ago
