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...vo genome assemblies Citation This software is fully described in the paper:Riba-Grognuz, Keller, Falque...ssment of de novo genome assemblies. In brief, our scripts create Cytoscape files to visualize transcript...2872 days ago
- gKaKs is a codon-based genome-level Ka/Ks computation pipeline developed and based on programs from four widely use...annotated genome or even a poorly assembled scaffold dataset. It is especially useful for newly sequen...
2866 days ago
- ...ow with a minimal set of tools that would reach state-of-the-art performance across a wide range of species. GeneMark-ET is a gene pr...e predictions. AUGUSTUS is a gene finder that usually requires supervised training and uses infor...
2011 days ago
- Redundans pipeline assists an assembly of heterozygous genome...e assembly or scaffolding more details. The pipeline consists of three steps/m...echnologies (Illumina, 454 or Sanger) and library types (paired-end, mate pairs, fos...
2864 days ago
- ...otal is 150 — if exceeded, rows and columns are limited to 75. If you are using order, size and color rows/columns in combination they must appear in that order. Need help...
2863 days ago
- ...en for hundreds of bioinformaticians trying to cope with large volume of next-gen...equencing of higher eukaryotes used to be very expensive endeavor. To get a genom...raise funds together by writing a joint white-paper and petitioning to various g...
2859 days ago
- ...e genome datasets warehoused in a chado relational database. It was developed by the bioinformatics depart...igh-level technical details about the overall architecture and external dependencies of the Sybil package.
2858 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Ass...ssembly program (http://en.wikipedia.org/wiki/Sequence_assembly...process known as Scaffolding. OPERA is based on an exact algori...e made significant changes to OPERA (v1.0 onwards) including re...d and use our latest version: OPERA-LG. In our benchmarks, it h...2856 days ago
- ...rates a Makefile. The actual assembly is done by invoking make. Premature assembly processes can be resumed. Here is an example:run-fermi.pl -dAPe ./fermi -p NA12878 -t16 -f18...
2856 days ago
CGView - Circular Genome Viewer
.... GView is useful for producing high-quality genome maps for use in publications and websites, or as a visualization tool in a sequence annotation pipeline. Users can interact with...2846 days ago
