2618 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based...e gaps left open by the assembler in a draft genome, even when using the same data sets as used by the original...2611 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for ...obes, 2006). Today, CABOG is one of the leading assembly programs for data sets that include paired end data from the Roche 454 line of se...2608 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to ann...ded version that is capable of processing a larger data volume. You can find a more d...'s annotation pipeline depends on several internal databases and is not currently ava...2607 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order...cies. We combine the results from this method with data from chromosome painting expe...s for 96.8% of the available human genome sequence data. The precision is further inc...2605 days ago
Artificial Intelligence Material !
Major Machine Learning Types Explianed in 11 Pages Credit: McKinsey For more applied resource you can see at: 1. Data Science Process https://lnkd.in/fMHtxYP 2. Data Visualization in Business htt...1799 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors i...gies and can be applied to single- or mixed-genome data. In addition to correcting su...rage areas of sequencing projects. Using published data sets, we correct 94% of Illum...2604 days ago
2602 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation s...olds, but makes fewer errors. This result is further improved when additional data, in the form of related genom...2600 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of...2599 days ago