3d-dna: 3D de novo assembly (3D DNA) pipeline
This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes reported in: Dudchenko et al., De novo assembly of the Aedes aegypti genome us...2348 days ago
Seal: SEquence ALignment evaluation suite
Seal is a comprehensive sequencing simulation and alignment tool evaluation suite. This software (implem...ons in the genome based on input parameters of read length, coverage, sequencing error rate, and indel rate....2343 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation...2010 days ago
LRCstats: Long Read Correction Statistics
...source pipeline for benchmarking DNA long read correction algorith...ds outputted by third generation sequencing technology such as machines p...ads produced by third generation sequencing technology, as the name sugge...ads outputted by next generation sequencing technologies to correct long...2341 days ago
2313 days ago
UCSC SARS-CoV-2 Genome Browser
The UCSC SARS-CoV-2 Genome Browser (https://genome.ucsc.edu/covid19.html) is an ad...including conservation with similar viruses, immune epitopes, RT–PCR and sequencing primers and CRISPR guides. We...878 days ago
Reference-free prediction of rearrangement breakpoint reads
lideSort-BPR ( b reak p oint r eads) is based on a f...analyses of the number of neighboring reads. When applied to a dataset with a sequencing depth of 100×, it finds...2279 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and...r Life Scientists 2016 November - Uppsala2017 Mars - Uppsala Single cell RNA sequencing analysis 2017 October - Upps...2239 days ago
2236 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed t...compute precise alignments. The gap model allows ngmlr to account for both the sequencing error and real genomic variat...2231 days ago