2586 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...s in assembled genomes using mate pair information. It is able to close gaps left open by the assembler in a draft genome, even when using the same data sets as used by the original...2579 days ago
CABOG: Celera Assembler with Best Overlap Graph
...es and second-generation pyrosequencing machines (Marine microbes, 2006). Today, CABOG is one of the leading assembly programs for data sets that include paired end data from the Roche 454 line of se...2576 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...replaced with an upgraded version that is capable of processing a larger data volume. You can find a more d...Handbook chapter. NCBI's annotation pipeline depends on several internal databases and is not currently ava...2575 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...acencies in modern species. We combine the results from this method with data from chromosome painting expe...an genome that accounts for 96.8% of the available human genome sequence data. The precision is further inc...2573 days ago
Artificial Intelligence Material !
Major Machine Learning Types Explianed in 11 Pages Credit: McKinsey For more applied resource you can see at: 1. Data Science Process https://lnkd.in/fMHtxYP 2. Data Visualization in Business https://lnk...1767 days ago
Pollux: platform independent error correction of single and mixed genomes
...54 sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcting su...sensitive to low coverage areas of sequencing projects. Using published data sets, we correct 94% of Illum...2572 days ago
2570 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...cterial genomes. Our algorithm constructs a comparable number of scaffolds, but makes fewer errors. This result is further improved when additional data, in the form of related genom...2568 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known re...2567 days ago