molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools supporting molecule manipulation and processing, including SMILES and SDfile conversion, normalization of molecules, gen...1987 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks....by the TyersLab and is a part of the BioGRID family of software. It utilizes both MySQL&...1987 days ago
Genome assembly forensics: finding the elusive mis-assembly
We present the first collection of tools aimed at automated genome assembly validation. This work formalizes several mechanisms for detecting mis-...tic genome assemblies, and highlight several as...both draft and finished genomes. The software described is compatible with...1980 days ago
IQ-TREE: Efficient software for phylogenomic inference
A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelih...to 73.3–97.1%. IQ-TREE is freely available at http://www.cibiv.at/software/iqtree...1958 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically d...and other graphical details. [Example] [Download software package (includes the manual)...u register) [Download manual] [Download software note from Molecular Ecol...1923 days ago
OMTools: a software package for visualizing and processing optical mapping data
OMTools, an efficient and intuitive data processing and visualization suite to handle and explore large-scale optical mapping profiles. OMTools includes modules for visu...1919 days ago
1904 days ago
Snakemake workflow: dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow for calling small genomic variants.1800 days ago
Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets
Simka is a de novo comparative metagenomics tool. Simka represents each dataset as a k-mer spectrum and compute several cl...cated to NGS datasets. https://gatb.inria.fr/software/simka/1819 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
The ability to generate massive amounts of sequencing data continues to overwhelm the pr...hms and compute infrastructures. In this work, we explore the use of hardware/software co-design and hardware accele...1699 days ago