2333 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single bin...2328 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
ETE v3, featuring numerous improvements in the underlying library of methods, and providing a...features include (i) building gene-based and supermatrix-based phylogenies using a single com...2316 days ago
Genome assembly stats plotting
A de novo genome assembly can be summarised b y a number of metrics, including:...hat summarises most commonly used assembly metrics in a single v...between alternative views, and each can be applied to a single or...2307 days ago
UCSC SARS-CoV-2 Genome Browser
The UCSC SARS-CoV-2 Genome Browser (https://genome.ucsc.edu/covid19.html) is an adapta...ncluding conservation with similar viruses, immune epitopes, RT–PCR and sequencing primers and CRISPR guides. We...899 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
we design a simple heuristic method to further revise our single reference-based scaffolding tool CAR into a new one called Multi-CAR such that it can utilize multiple complete genomes...2301 days ago
Reference-free prediction of rearrangement breakpoint reads
lideSort-BPR ( b reak p oint r eads) is based on a fast...analyses of the number of neighboring reads. When applied to a dataset with a sequencing depth of 100×, it finds...2299 days ago
EWAS: epigenome-wide association study software 2.0
EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations and...ur “population epigenetic framework” and can perform: (1) epigenome-wide single mar...2286 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environmental resear...s for Life Scientists 2016 November - Uppsala2017 Mars - Uppsala Single cell RNA sequencing analysis 2017 October - Upps...2259 days ago
2257 days ago