Results for "TE"
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CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target dep...ration and genome size, then select what you want to calculate. Written by Stephen Turner, based on the Lander-Waterman formula, inspired by a si...2218 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...enetic distances. Results: We present Cnidaria, a practical tool for clustering genomic and transcriptomi...e-nome size or phylogenetic distances. We successfully simultaneously clustered 169 genomic and transcript...2931 days ago
- ...here: https://peerj.com/articles/1319/ Anvi’o would not have been possible without the help of many people who directly or indirectly contributed to its development. Here is...
2931 days ago
- ...nal profiles for genes and gene clustersBioconductor version: Releas...(GO and KEGG) of gene and gene clusters.Author: Guangchuang Yu <...l.com>Citation (from within R, enter citation("clusterProfiler"))...p:// if https:// URLs are not supportedsource("https://bioconductor....
2931 days ago
- ...phylogenetically atypical proteins on a genome-wide basis. It...using these matches to calculate a lineage probability index (...f horizontally transferred proteins, but can also serve as an...phylogenetic background of potential HGT donors as well as re...
2926 days ago
- ...the evolution of genome architecture. Existing HGT detection...es in its recipient genome. Detecting HGT between closely rela...re is a great importance in detecting HGT between congeneric s...viations according to both synteny and mutability criteria, is...
2926 days ago
Linux command line exercises for NGS data processing
...@quince-srv2 ~/linuxTutorial]$ I have deliberately chosen Awk in the exercises...as it is a language in itself and is used more often to manipulate NGS data as co...additional shell programs on a typical Linux system such as ksh, tcsh, and zsh....2926 days ago
- ...s.org. 1.1: July 24, 2013: Updated with Disqus Comments / Feedb...nbsp; 1.2: December 19, 2014: Multiple updates, including: ...other tools, and sample data sets are provided. Terms in bold are also explained...
2925 days ago
- ...ads from a reference genome. It is able to simulate diploid genomes with SNPs and...ertion/deletion (INDEL) polymorphisms, and simulate reads with uniform substituti...equencing errors, but this can be partly compensated by simulating INDEL polymorp...
2925 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acqu...enues of biological experiments. CSBB is implemented in Perl, while it also lever...ology and bioinformatics community, to get benefited by performing down-stream an...
2919 days ago
