Results for "Whole genome re-sequencing"
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Mauve is a system for constructing multiple genome alignments in the presence of larg...rrangement and inversion. Multiple genome alignments provide a basis fo...parative genomics and the study of genome-wide evolutionary dynamics....ple, a pair of Y. pestis genomes can b...2027 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method would have been enough to assemble large genomes from Sanger reads. In contrast, real genomes often...
2749 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions...g the synteny correspondences in Plant Genome Duplication Database. It is i...conserved gene arrays both within the same genome and ac...
2747 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a m...ry vanilla C). It can analyze an entire microbial genome in 30 seconds or less. Accur...different: Prodigal performs well even in high GC genomes, with...2741 days ago
- MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communit...ex microbial communities, or metagenome binning, enables the study of...re we developed an automated metagenome binning software, called Meta...4 human gut samples formed 1,634 genome bins (...
2673 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements git gcc 4.2 or newer python...0GB+ of memory on at least one machine when aligning mammal-sized genomes; less...
2721 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing f...n. Such analyses are often based on whole-genome alignments to elucidate struc...putational tools that can visualize genome alignments in a meaningful ma...informatics/article/28/12/i7/268598/GenomeRing-al...2720 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best a...or download from http://faculty.virginia.edu/irahall/YAHA. Contact: http://genome.wustl....
2718 days ago
- A flexible framework for rapid genome analysis and interpretation C Chiang, R M Layer, G G Faust, M R Lindberg, D...arrison, G T Marth, A R Quinlan, and I M Hall. SpeedSeq: ultra-fast personal genome analys...
2718 days ago
- Harvest is a suite of core-genome alignment and visualization tools for q...thousands of intraspecific microbial genomes, including variant calls, re...rees. Tools Parsnp - Core-genome alignment and analysis Gingr...AM. The Harvest suite for rapid core-genome alignm...
2707 days ago
