Results for "data analysis"
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Harvest is a suite of core-genome alignment and visualization tools for quickly ana...n, and phylogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive vis...2702 days ago
TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate...nit git submodule update https://github.com/iontorrent/TS/tree/master/Analysis/TMAP2640 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
...is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a numbe...ensive DNA polymorphism analyses on large datasets. Among other features, th...thods allow for: (i) analyses on multiple data files; (ii) haplotype phasing; (i...2696 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running C...ainter, finestructure and ChromoPainter for RAD tag data used for non-model organisms....important haplotype information from dense genotype data. It...2689 days ago
- ...each cancer type being over 200. The resulting data consisting of genetic variant...sources or any in-house studies as long as the data is in MAF format. Maftools ca...nda, A. and H.P. Koeffler, Maftools: Efficient analysis, visualization and summarizat...
2686 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular...f genomes, with a focus on handling genome assembly data. The application is available...es, draft genomes or even raw, unassembled sequence data. B...
2685 days ago
- This sockeye software uses the Ensembl database project to import sequence and annotation inf...y import their own custom sequence and annotation data. Individual annotation object...eye. By using the Java3D API to visualize genomic data in...
2685 days ago
- Circos plot tool (J-Circos) that is an interactive visualization tool that c...as well as being able to dynamically add data to the figure, and providing information for specific data points using mouse hover disp...(Windows, MacOS, Linux). Users can input data int...
2685 days ago
- Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used t...
2678 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic method that esti...n be used for whole genome shotgun (WGS) sequencing data. They also show applicability...e dosage estimation. Results for simulated and real datasets...2678 days ago
