2609 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on...e gaps left open by the assembler in a draft genome, even when using the same data sets as used by the original...2602 days ago
CABOG: Celera Assembler with Best Overlap Graph
...t-generation Sanger sequencing machines and second-generation pyrosequencing machines (Marine microbes, 20...06). Today, CABOG is one of the leading assembly programs for data sets that include paired end data from the Roche 454 line of se...2599 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annota...ded version that is capable of processing a larger data volume. You can find a more d...'s annotation pipeline depends on several internal databases and is not currently ava...2598 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and...cies. We combine the results from this method with data from chromosome painting expe...s for 96.8% of the available human genome sequence data. The precision is further inc...2596 days ago
Artificial Intelligence Material !
Major Machine Learning Types Explianed in 11 Pages Credit: McKinsey For more applied resource you can see at: 1. Data Science Process https://lnkd.in/fMHtxYP 2. Data Visualization in Business htt...1790 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors intr...gies and can be applied to single- or mixed-genome data. In addition to correcting su...rage areas of sequencing projects. Using published data sets, we correct 94% of Illum...2595 days ago
2593 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequ...olds, but makes fewer errors. This result is further improved when additional data, in the form of related genom...2591 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of...2590 days ago