Results for "Genome Sequence"
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PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncall...g residues), they can be removed from the sequence during assembly. The final se...the threshold and discard the ends of the sequence, including the primer.2.Pick...2716 days ago
- Harvest is a suite of core-genome alignment and visualization tools for qu...thousands of intraspecific microbial genomes, including variant calls, re...trees. Tools Parsnp - Core-genome alignment and analysis Gingr...AM. The Harvest suite for rapid core-genome a...
2707 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map constructio...l exons against all exons in other genomes and record significant align...t have exons in all or most of the genomes)...
2702 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which use...This is made possible by the sequence annealing technique for const...such as aligning thousands of sequences or megabase-long sequences....A can quickly align very long sequences using the "anchor annealing"...2702 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of...rphism data; (iv) visualizing sliding window results integrated with available genome a...2702 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running ChromoPainter and FineSTRUCTUR...for methodology for Chromosome Painting. It is not a facility to analyse your genome....2694 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genom...(MAF) is being widley accepted and used to store variants detected. The Cancer Genome A...
2691 days ago
- ABACAS is intended to rapidly contiguate (align, order, orientate) , visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence. It uses MUMmer to find align...
2691 days ago
- ...ons between a large number of genomes, with a focus on handling genome assembly data. The applicatio...y between a central reference sequence and other sequences as concentric rings. BRIG w...egions present in unassembled sequence data from multiple samples to...
2691 days ago
- GenomeComp is a tool for summarizing..., parsing and visualizing the genome wide sequence comparison results derived...g and visualize large genomic sequences, especially closely related genomes such as inter-species or inter...ition, it can also show other sequence features like repeat sequence...
2690 days ago
