Results for "PA"
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CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genome...sers can interact with the genome using a powerful pan-and-zoom interface, or GView...ite of CGView, a circular genome viewer written by Paul Stothard. The goal of GView...2842 days ago
BLAST Ring Image Generator (BRIG)
...cation that can display circular comparisons between a large number...rackers on BRIG’s SourceForge page: http://sourceforge.net/tra...gs. BRIG will perform all BLAST comparisons and file parsing automa...data from multiple samples to be compared simultaneously...2831 days ago
- ...is a software toolset that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. To install DECIPHER, see the Downloads page. To begin using DECIPHER re...
2831 days ago
- Strudel is our graphical tool for visualizing genetic and physical maps of genomes for comparative purposes. The application aims to let the user examine their data at a variety of...
2831 days ago
- ...), or 8 mammals in 21 CPU hours (42 wall minutes)) scalable (Arbitrarily parallelizable across multiple n...gle node with 16GB of ram can handle over 1Gbp of sequence) unlimited by pattern length or selection rep...
2831 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...A new trait coding for (Bateson-)Dobzhansky-Muller incompatibility loci. Multiple haploid or diploid pairs of incompatible loci can b...iotropic loci with several bi- or multi-allelic models. Spatial and temporal variation of...2830 days ago
- ...ted from traditional cytogenetic coordinates down to the actual base pair positions. Furthermore, mul...preting their effects challenging. The Rearrangement Overview page describes the one or more b...
2830 days ago
- ...romosomal CNA-associated breaks by a genome-wide approach, which can be applied to DNA copy number data obtained by array-Comparative Genomic Hybridization (CGH) or by (low-pass) whole genome sequencing (W...
2211 days ago
- ...at presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a bipartite network compatible with common network anal...
2824 days ago
- ...ferent mappers, create differential gene (miRNA) expression profiles and cluster reads using one of several algorithm. MIRO output is furthermore compatible with software such as ge...
2827 days ago
