DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...a single genome, segmental genome duplications can be revealed. This software distribution includes both the DAGchainer utility and a Java-based graphical interface that allows th...2697 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...process, they report findings regarding errors in sequencing. The method can be used for whole genome shotgun (WGS) sequencing data. They also show applicability of the method for...2690 days ago
2690 days ago
2688 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...found in downloads.----- PBJelly -----Read The Paper http://www.plosone.org...aft assembles. PBJelly fills or reduces as many captured gaps as possible to prod...an implementation of two variant-identification approaches designed to exploit t...2687 days ago
splitbam: splits a BAM by chromosomes
...HROM__/__CHROM__.bam -R ref.fasta (bam|sam|stdin) Options -h help; This screen. -R (indexed reference file) REQUIRED. -u (unmapped chromosome name): default:Unmapped -e | --empty : generate E...2686 days ago
YASRA: Reference based assembler
...d Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping reads to reference genome...2685 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
...rticular regions. The program is written in Java in order to provide a graphical user interface that is p...al Alignments with Java". Currently it exists in two forms, a stand-alone application and a web-based appl...2685 days ago
2683 days ago
2680 days ago