2329 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
...phylogenetics. The new features include (i) building gene-based and supermatrix-based phylogenies usi...(iii) calculating distances between trees of different size or including duplications, and (iv) providin...2325 days ago
Genome assembly stats plotting
...ly base composition, in particular percentage GC and percentage Ns CEGMA completeness Scaffold/contig length/count distribution assembly-stats supports two widely used presenta...2316 days ago
2314 days ago
StatBio (Simpson Group WebPage)
2310 days ago
GMOL: An Interactive Tool for 3D Genome Structure Visualization
GMOL was developed based upon our multi-scale approach that allows a user to scale between six separate levels within the genome. With GMOL, a user can choose any unit at any scale and scale it up or down to visualize its structure and retrieve corresponding genome sequences.2295 days ago
SciLifeLab tutorial for bioinformatics analysis !
...014) Metagenomics Workshop 2015 November - Uppsala2016 November - Uppsala2017 November - Uppsala...- Uppsala2015 November - Lund2016 January - Uppsala2016 April - Linköpi...er - Uppsala RNA-seq course 2015 October - Uppsala2016 April - Uppsala2016...2268 days ago
2266 days ago
DendroPy: a Python library for phylogenetic computing
...sing, and manipulation of phylogenetic trees and character matrices, and supports the reading and writing...o; primer . API documentation . Descriptions of data formats supported for reading/writing&nbs...2262 days ago
MITObim - mitochondrial baiting and iterative mapping
... data, but thanks to the versatility of the MIRA assembler, MITObim supports in principle also data f...lot of time down the line. I provide further examples here as Jupyter notebooks. Get in touch i...2247 days ago