Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data a...2534 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strateg...r evolutionarily distant and closely related species. Input formats, automated data u...2532 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of diffe...with computational efficiency, accessibility, and user experience, so that NGS data c...2527 days ago
LIBSVM -- A Library for Support Vector Machines
...els (including precomputed kernel matrix) Weighted SVM for unbalanced data Both C++ and Java ...nbsp;CUDA extension is available. It's also included in some data mining environments: RapidMiner...2519 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (mo...tised 1%) error rate, 100 × coverage Illumina data on average has an error in so...base in the genome. These errors make handling the data m...2421 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and t...QC results of each fastq file/pair.Currently it supports processing data f...2416 days ago
2415 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chro...n all the ancestral species within the phylogenetic range of interest. All the data o...2410 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and b...software on both simulated and biological realistic data and compared its performance with similar existing software and data s...2410 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequ...l complement to standard bioinformatics analyses prior to submission of genomic data t...2406 days ago