Nextflow: Data-driven computational pipelines
Nextflow enables scalable and reproducible scientific workflows using software containers. It allows th...on scripting languages. Its fluent DSL simplifies the implementation and the deployment of complex parallel and rea...1591 days ago
1590 days ago
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
Apollo is an assembly polishing algorithm that attempts to correct the errors in an...e multiple set of reads in a single run and polish the assemblies of geno...More at https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinfo...1565 days ago
JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wiki1564 days ago
QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
Data on protein-drug and protein-chemical interactions are rapidly accumul...Indeed, recent studies, both computational and experimental, highlighted the...se known in public databases; and many proteins bind chemicals...ts. https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinfo...1549 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
Dahak is a software suite that integrates state-of-the-art open sour...ng, metagenome assembly, taxonomic and functional classification, genome binning, and gene assignment. We aim to de...associated with other open-source bioinformatic...ess of tracing the origins of data and its...1542 days ago
PPAI: a web server for predicting protein-aptamer interactions
PPAI can query aptamers and proteins, predict aptamers and predict protein-aptamer interactions in batch mode precisely and efficiently, which would be a novel bioinformatics tool for the research of protein-aptamer interactions. PPAI web-server is freely available at http://39.96.85.9/PPAI1477 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron and Splice regions extracted from...of this data set is to give standardized material to train and...ss the prediction accuracy of computational approaches for gene identification and characterization. From the co...1477 days ago
1492 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61, Improve...anks to reviewers). Interactive networks and much more. 5/20/2019: V.0.60...ase updated to Ensembl 96. New bacterial and fungal ge...mbl (Release 96), Ensembl plants (R. 43) and Ens...1486 days ago