iTOL: Interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display, annotation and management o...Explore your trees directly in the browser, and annotate them with various types of data. iT...2545 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data abou...2545 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full lo...les for evolutionarily distant and closely related species. Input formats, automated data uplo...2543 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-a...BLAST with computational efficiency, accessibility, and user experience, so that NGS data can...2538 days ago
LIBSVM -- A Library for Support Vector Machines
...Since version 2.8, it implements an SMO-type algorithm proposed in this paper:R...d kernel matrix) Weighted SVM for unbalanced data Both C++ and Java ...is available. It's also included in some data mining environments: RapidMiner,&n...2530 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of dee...ads, and apply it to the assembly of a dataset of paired 75-bp Illumina r...unique high quality extensions in the datase...placements. Practical issues with the dataset are described, and...2433 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most o...dvertised 1%) error rate, 100 × coverage Illumina data o...very base in the genome. These errors make handling the data more...2431 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq f...d the QC results of each fastq file/pair.Currently it supports processing data from...2427 days ago
2425 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimension...ture in all the ancestral species within the phylogenetic range of interest. All the data on e...2421 days ago