LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a...early align them to solve the small variations or sequencing errors, and mitigate the effe...and real datasets having various read lengths and sequencing error rates, the results demo...2231 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
HapCUT2 is a maximum-likelihood-based tool f...r speed and accuracy across diverse sequencing technologies, including but n...reads (Illumina HiSeq) clone-based sequencing (Fosmid or BAC clones) SMRT...rate haplotype assembly for diverse sequencing technologies. Genome Res. gr....2231 days ago
Circlator: automated circularization of genome assemblies using long sequencing reads
A tool to circularize genome assemblies. The algorithm and benchmarks are described in...tation: "Circlator: automated circularization of genome assemblies using long sequencing reads", Hunt et al, Genome Bi...2231 days ago
2223 days ago
2223 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It is an...it is one order of magnitude faster. It require only 2 minutes aligning one million single-end...2223 days ago
GenomeMapper: Simultaneous alignment of short reads against multiple genomes
GenomeMapper is a short read mapping tool designed for accurate read alignments. It quickly a...nments. It can be used to align against multiple genomes simulanteously or against a single ref...2221 days ago
2218 days ago
WhatsHap: fast and accurate read-based phasing
WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with...2218 days ago
SWALO: Scaffolding with assembly likelihood optimization
SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Please email your questions, comments, suggestions, and bug reports to atif.bd@gmail.com.2196 days ago