Results for "TE"
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...should hold true for a correct assembly (e.g., mate-pairs are aligned at the corr...c.). The violations of these invariants are reported allowing one to pinpoint are...e data-sets, VALET also reports an overall estimate of the likelihood a particula...2834 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic informatio...ntries to graphical maps. The input text file has to be in GenBank f...ion is especially optimized and adapted for the creation of high-qua...The workflow is devided into three steps. More at http:/...
2871 days ago
- ...tomating the runs of RECON and RepeatScout given a genomic database and uses the output to build, refine and classify consensus models of putative interspersed repeats.
2869 days ago
- We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".
2869 days ago
- ...ion. The variant call format (vcf) is an increasingly popular format for this data. The format of these files and their content is discussed in the vignette ‘vcf data.’ These...
2868 days ago
- Faster, more accurate algorithms function prediction "GeneMANIA (Multiple Association Network Integration Algorithm)" have however been developed in recent years and are publicly available on the web, indicating the future direction of function prediction.
2865 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. Howeve...ntigs) arranged in thousands of scaffolds instead of small numbers of chromos...enome assemblies. In brief, our scripts create Cytoscape files to visualize...
2863 days ago
GeneValidator - Identify problems with predicted genes
...predictions and provide useful information extracted from analysing orthologs in...ed by biocurators and researchers who need accurate gene predictions. If you wou...If you use GeneValidator in your work, please cite us as follows: Dragan M&Da...2861 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of different...ENESH, GenomeScan, GrailEXP and GENEWISE will be used to annotate the sequence. Both search by signal, content and homology (protein and c...
2861 days ago
- ...l and yn00) and KaKs_Calculator (including 10 substitution rate estimation methods). gKaKs can automatically detect and eliminate frameshift mu...ul for newly sequenced genomes that have not been well annotated. Look for KaKs calcul...
2858 days ago
