iTOL: Interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display, annotation and management of phylogenetic trees....re your trees directly in the browser, and annotate them with various types of data....2544 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data ab...2544 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strate...evolutionarily distant and closely related species. Input formats, automated data up...2542 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of diff...with computational efficiency, accessibility, and user experience, so that NGS data ca...2537 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classification, (C-SVC, ...omputed kernel matrix) Weighted SVM for unbalanced data Both C++ and Java ...nsion is available. It's also included in some data mi...2529 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (mo...tised 1%) error rate, 100 × coverage Illumina data on average has an error in so...base in the genome. These errors make handling the data mo...2431 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and t...QC results of each fastq file/pair.Currently it supports processing data fr...2426 days ago
2425 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chr...all the ancestral species within the phylogenetic range of interest. All the data on...2421 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and b...software on both simulated and biological realistic data and compared its performance with similar existing software and data so...2421 days ago