Results for "Annotation"
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CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> ...2838 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1265 days ago
- ...se regions of similarity and difference between genomes and to explore conservation of synteny, in the context of the entire sequences and their annotation. It can read complete EM...
2836 days ago
CGView - Circular Genome Viewer
...l genomes. GView is useful for producing high-quality genome maps for use in publications and websites, or as a visualization tool in a sequence annotation pipeline. Users can interact...2824 days ago
- The accurate description and annotation of structural variants can be complex. This is due to the different resolution that variants are reported from traditional cytogeneti...
2812 days ago
- ...al CNA-associated breaks that were previously pinpointed by the segmentation algorithm that was applied to obtain CNA profiles. Next, a tailored annotation approach for breakpoint-to-ge...
2193 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
...e pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome assembly and annotation can be obtained with ease. It...2737 days ago
- Simple ideogram plotting and annotation in R. Basic usage: Rscript Id...t.R --heatmap hm.bed --annotate annotations.bed --out ideogram.pdf -or- Rscript Ideoplot.R --annotate annotations.bed Options --ideobed, i...--annotate, -a Add character annotations. --out, -o PDF ou...
2677 days ago
- ...MAF files. Introduction. With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley...data consisting of genetic variants is stored in the form of Mutation Annotation Format. This package attempts...
2674 days ago
- ...bsp;software uses the Ensembl database project to import sequence and annotation information from several euka...species. A user can additionally import their own custom sequence and annotation data. Individual annotation o...
2673 days ago
