2542 days ago
LIBSVM -- A Library for Support Vector Machines
...e. It's also included in some data mining environments: RapidMiner, PCP, and LIONsolver. Automatic model selection which can generate contour of cross validation a...2523 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
...is intended to provide tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer. It includes a functions to generate a number plots for examining...2410 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...e a consensus step. It simply concatenates pieces of read sequences to generate the final unitig se...s that at least for high-coverage bacterial genomes, it is possible to generate long contigs from raw PacBio...2406 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a database of g...2399 days ago
2393 days ago
Generate interactive codon usage plots
Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demo2313 days ago
npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
npScarf (jsa.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer to finish. These pipelines can run on a single laptop for microbia...2210 days ago
RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
RestrictionDigest can simulate the reference genome digestion and generate comprehensive information of the s...selection process. It can also analyze multiple genomes at one run and generates concise comparison of enzyme...2209 days ago
2229 days ago