SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the c...2958 days ago
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OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.w...uscript describing the new features and algorithms is available at Genome Biology. We look forward to getting y...2839 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications and websites, or...2829 days ago
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Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/com...gdon/ps/conference/super_biokdd.pdf https://ocw.mit.edu/courses/biology/7-91j-foundations-of-computational-and-systems-biology-spring-2014/lecture-slides/MI...2745 days ago