2534 days ago
LIBSVM -- A Library for Support Vector Machines
..., nu-SVR) and distribution estimation (one-class SVM). It supports multi-class classification. Since...es of LIBSVM include Different SVM formulations Efficient multi-class classification Cross v...2511 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...g on unique software architecture, PLAST takes full advantage of recent multi-core personal computers witho...olution. It is easy to install, cost-effective, takes full advantage of multi-core processors and uses a sm...2390 days ago
Musket: a multistage k-mer spectrum based corrector
...k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performanc...performing substitution-error-based correctors. In addition, Musket is multi-threaded using a master-slave...2385 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phyl...e files from the leaf nodes of a completed simulation; extract pairwise multiple alignment files (.maf) fro...2382 days ago
Mugsy: multiple whole genome alignment tool
Mugsy is a multiple whole genome aligner. Mugsy uses Nucmer for pa...linear regions, and the segment-based progressive multiple alignment strategy from Se...offee. Mugsy accepts draft genomes in the form of multi-FASTA files and does not requ...2382 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...e to be redundant with the assembly process. Meraculous achieves high performance with large datasets by utilizing lightweight data structures and multi-threaded parallelization, all...2370 days ago
Japanese Multi Omics Reference Panel, jMorp
Japanese Multi Omics Reference Panel, jMorp, is a database of metabolome and proteome data in plasma obtained from volunteers in ToMMo. Metabolome data were measured by pro...2368 days ago
MeDuSa: a multi-draft based scaffolder
MeDuSa (Multi-Draft based Scaffolder), an algorithm for genome scaffolding. MeDuSa exploits information obtained from a set of (draft or closed) genomes from related organ...2315 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...affolding tool CAR into a new one called Multi-CAR such that it can utilize multiple complete genomes of relate...a draft genome. In practical usage, our Multi-CAR does not require prior kn...ared its accuracy performance with other multiple reference-based scaffoldin...2294 days ago