Results for "Organisms"
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HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...ow for specific examples of command line options and best practices for some of these technologies. NOTE: At this time HapCUT2 is for diploid organisms only. VCF input should contai...2211 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
...lgorithms, it is feasible to study entire transcriptomes of non-model organisms. While algorithms are availab...y-efficient algorithm for de novo transcriptome assembly of non-model organisms. BMC Genomics 18(Suppl 4):387...2162 days ago
RNA-seq Analysis Workshop Course Materials
...reference genome and significantly improves our ability to reconstruct transcripts. This category would obviously include humans and most model organisms but excludes the majority of...2162 days ago
- ...complex data sets. Population and Quantitative Genetics: study of how genetic processes evolve to generate genetic variation in populations of organisms, and the effects on the patte...
2098 days ago
nQuire: a statistical framework for ploidy estimation using next generation sequencing
nQuire provides a statistical framework to study organisms with intraspecific variation in ploidy. nQuire is likely to be useful in epidemiological studies of pathogens, artificial sel...2069 days ago
KEGG Mapper – Reconstruct Pathway
...hat assists genome and metagenome annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for multiple organisms) annotated with KEGG Ortholog...2000 days ago
- ...-supported GO annotations. These provide the core dataset for additional inference of over 6 million functional annotations for a diverse set of organisms spanning the tree of life. I...
1970 days ago
simuG: a general-purpose genome simulator
...pectrum of genomic variants (single nucleotide polymorphisms, Insertions/Deletions, copy number variants, inversions and translocations) for any organisms (including human). The simpli...1649 days ago
- ...therapeutic discovery strategies Hardware such as low-cost lab equipment or diagnostics Open or low-cost bioinformatics tools Engineered organisms for the production of small m...
1583 days ago
Tadpole: an assembler, error-corrector, and read-extender
...orrecting and extending reads. It does not do any complicated graph analysis or scaffolding, and therefore, is not particularly good for diploid organisms. Tadpole is very conserv...1580 days ago
