2334 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to infer autosomal and sex-linked genes (genes locate...2209 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module) and functional gene set enrichment(Enrichment module). For Annotate module, it...2068 days ago
Genome sequence-based (sub-)species delineation.
...differences in genomic G+C content. http://ggdc.dsmz.de/ggdc_background.php# Genome-to-Genome Distance Calculator 2.1 http://ggdc.dsmz.de/ggdc.php2014 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
The software package SiLiX implements an ultra-efficient algorithm for the clustering of homologous sequences, based on single transitive links (single linkage)...2014 days ago
Genome assembly forensics: finding the elusive mis-assembly
...n-source, at http://amos.sourceforge.net. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2397507/ http://amos.sourceforge.net/wiki/index.php/AMOS1968 days ago
Tadpole: an assembler, error-corrector, and read-extender
...ength of 62:tadpole.sh in=reads.fq out=extended.fq mode=extend el=50 er=50 k=62 ecc=t More at http://seqanswers.com/forums/showthread.php?t=614451594 days ago
Genome assembly training tutorial at Galaxy !
In this tutorial we assemble and annotate the genome of E. coli strain C-1. This strain is routinely used in experimental evolution studies involving bacteriophages....1268 days ago
1230 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
Gaussian Network Model (GNM) is a powerful tool to sample conformational dynamics based on contact topology in a coarse-grained presentation. Here we present a method...882 days ago