gSearch: a fast and flexible general search tool for whole-genome sequencing
gSearch compares sequence variants in the Genome Variation Format (GVF) or Variant Call Format (VCF) with a pre-compiled annotation or with variants in other genomes. Its search algorithms are subsequently optimized and implemented in a multi-threaded manner.2150 days ago
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Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.com/biotite-dev/biotite). This package is simple to use especially for the beginners in progra...2017 days ago
Quick tour of Genetic Algorithms !
The R package GA provides a collection of general purpose functions for optimization using genetic algorithms. The package includes a flexible set of tools for implementing...1987 days ago
Miropeats: discovers regions of sequence similarity amongst any set of DNA sequences
...arity information graphically. Sequence similarity searching is a very general tool that forms the basis of...gle page of graphics. The latest version of Miropeats can be used as a general pairwise alignment program or...1765 days ago
simuG: a general-purpose genome simulator
...opy number variants, inversions and translocations) for any organisms (including human). The simplicity and versatility of simuG make it a unique general-purpose genome simulator for...1672 days ago
GfaViz: flexible and interactive visualization of GFA sequence graphs
...raphs. Although it was originally conceived as a format for sequence assembly (hence the name), and this remains its core application, it is more general, and able to represent many d...1616 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...memory footprint for 100 million reads, it can be run on virtually any desktop or server. The software is available free of charge under the GNU General Public License from http...1603 days ago