UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries...e viewed by running the binary with no arguments. The UCSC Genome Browser and Blat software are free for academic, no...nstallation of these binaries, with the exception of items built...icensing of the Genome Browser softwar...3027 days ago
3021 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates co...l system to perform and support vertebrate comparative genomic analyses. We use robust softwar...3017 days ago
3016 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represe...m RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysa...acing the paths that reads and pairs of reads take within...2993 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair...ully parallelized and can run with as low as just a few kilobyte...paired-end read overlaps and without requiring the target fragm...se-positive results. Together with a highly optimized implementa...tp://www.exelixis-lab.org/web/softwar...2979 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for com...assembly based on the error calls. The software requires as input an asse...s also available, REAPR can combine this with th...2979 days ago
2967 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is important to kn...RNA-Seq De novo transcript discovery and differential analysis with Cufflinks Differential expression analysis with R/...2959 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The softwar...2942 days ago