npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft...a computing cluster as well as on a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information suc...2597 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies cap...folds, but makes fewer errors. This result is further improved when additional data, in...2597 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It...2596 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny block...among multiple species by using prebuilt alignments in the UCSC genome browser database...2596 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydr...esources on the web include CAZy database and CAT. All da...family classification from CAZy database while it has the fol...arities; dbCAN make all pre-computed data fre...2591 days ago
2591 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262580 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
BEDOPS v2.4.26 is a suite of tools to address common...verlap and proximity relationships between data sets. It aims to be scalable...e, facilitating the efficient and accurate analysis and management of large-scale genomic data. The overview section of the BED...2577 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/su...were generated based on minimum cost flow analysis of the overlap graph and...ble overall performance on a HiSeq 100-bp dataset and superior performance on a MiSeq 300-bp dataset. In comparison with Celera on...2549 days ago
2564 days ago