Results for "NT"
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...two or more DNA sequences. It can be used to identify and analyse regions of sim...between genomes and to explore conservation of synteny, in the context of the ent...It can read complete EMBL, GENBANK and GFF entries or sequences in FASTA or...2854 days ago
GAGE : Genome Assembly Gold-standard Evaluation
...ve organized this "bake-off" as an attempt to produce a realistic assessment of genome assembly software i...of genome assemblies and assembly algorithms. http://genome.cshlp.org/content/early/2012/01/12/gr.131383...2854 days ago
OPERA : Optimal Paired-End Read Assembler
...ired-end/mate-pair/long reads to order and orient the intermediate contigs/scaffolds as...he original publication, we have made significant changes to OPERA (v1.0 onward...: OPERA-LG. In our benchmarks, it has significantly improved corrected N50 and...2852 days ago
- ...ssemblers. Its ultimate goal is to find a minimal set ofunitigs to represent all the information in raw re...similar workflow.As a typical de novo assembler, fermi tends to produce contigs with slightly longer...
2852 days ago
CGView - Circular Genome Viewer
...lization tool in a sequence annotation pipeline. Users can interact with the genome using a powerful pan-and-zoom interface, or GView can write sta...aul Stothard. The goal of GView is to provide greater user interaction, and more flexibility...2842 days ago
BLAST Ring Image Generator (BRIG)
...projects/brig If you have any questions or comments, post them on one of the tra...Features: Images show similarity between a central reference sequence and oth...read-mapping files enabling genomic regions present in unassembled sequence data...2831 days ago
- DECIPHER is a software toolset that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. To install DECIP..."Getting Started DECIPHERing" tutorial. Refer to the PDF documents below for instructions on ho...
2831 days ago
- ...nd physical maps of genomes for comparative purposes. The application aims to let the user examine their data at a variety of different levels of resolution, from entire maps to individual markers...
2831 days ago
- Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours...across multiple nodes using MPI) memory efficient. (Even a single node with 16G...ted by pattern length or selection repeat tolerant...
2831 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...can hold an unlimited number of loci of different types jointly, at any recombination scale...ection: Individual fitness can be jointly determined by different typ...connected sub-populations. This offers a substantial gain in computing time and...2830 days ago
