Mobyle: a new full web bioinformatics framework
...hus enabling a federated network of curated bioinformatics portals without the user having to learn complex concepts or to install sophisticated software.2371 days ago
mojolicious: a next generation web framework for the Perl programming language.
...ople learned Perl because of a wonderful Perl library called CGI. It was simple enough to get started...out the language and powerful enough to keep you going, learning by doing was much fun. While most of the...2366 days ago
Dot, an interactive viewer for genome-genome comparison
...assemblies and perform exploratory comparative genomics. Dot supports the output of MUMmer’s nucmer aligner the most commonly used software method for aligning genome...2364 days ago
2359 days ago
Alfred: BAM Statistics and Feature Counting
The easiest way to get Alfred is to download a statically linked binary from the Alfred github release page. Alternatively, you can build Alfred from source. Alfred de...2356 days ago
HTTDB - Horizontally transferred transposable elements database
...n is called Horizontal Transposons Transfer. HTT was first discovered by Daniels...(1984) when analysing a P element that was transferred from Drosop...es in many taxa. To date, there has been no easy way to visualise each TE or host...2355 days ago
RGFA: powerful and convenient handling of assembly graphs
...equence, using information not available to the assembler. We illustrate a use case, in which the assembly of a repetitive metagenomic fosmid insert was completed using a script bas...1629 days ago
karyoploteR: plot whole genomes with arbitrary data
...em. It is inspired by the R base graphics system and does not depend on other graphics packages. The aim of karyoploteR is to offer the user an easy way to plot data along the genom...2012 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper:&...2341 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a...2340 days ago