npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
...with Oxford Nanopore sequencing. The pipeline can run on a computing cluster as well as on a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information suc...2593 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies cap...folds, but makes fewer errors. This result is further improved when additional data, in...2593 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It...2592 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny block...among multiple species by using prebuilt alignments in the UCSC genome browser database...2592 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydr...esources on the web include CAZy database and CAT. All da...family classification from CAZy database while it has the fol...arities; dbCAN make all pre-computed data fre...2587 days ago
2587 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262576 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
...with regard to overlap and proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale genomic data. The overview section of the BED...2573 days ago
Omega2: metagenome assembly pipeline
...ranches. Unitigs were generated based on minimum cost flow analysis of the overlap graph and...provided comparable overall performance on a HiSeq 100-bp dataset and superior performance on a MiSeq 300-bp dataset. In comparison with Celera on...2545 days ago
2560 days ago