shinyCircos: an R/Shiny application for interactive creation of Circos plot
...could be easily generated and decorated with simple mouse-click. Tutorial http://shinycircos.ncpgr.cn/shinyCircos_Help_Manual.pdf Github https://github.com/venyao/shinyCircos1612 days ago
Leaflet: JavaScript libraries for interactive maps
...play maps in non spherical mercator projections Augment map features using chosen plugins from leaflet plugins repository https://rstudio.github.io/leaflet/1609 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the a...1609 days ago
Sequence Tube Maps: displays multiple genomic sequences in the form of a tube map
A JavaScript module for the visualization of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with vg. (https://github.com/vgteam/vg) Link to working demo: https://vgteam.github.io/sequenceTubeMap/1579 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related...1607 days ago
SLR-superscaffolder: A scaffold assemble pipeline for stLFR reads.
This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds. Here is an illustration of this pipeline:1605 days ago
LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
...g. mapping or base/indel alignment uncertainty), which are usually ignored by other methods or only used for filtering. https://github.com/CSB5/lofreq http://csb5.github.io/lofreq/installation/ http...1601 days ago
pbmm2:A minimap2 frontend for PacBio native data formats
pbmm2 is a SMRT C++ wrapper for minimap2's C API. Its purpose is to support native PacBio in- and output, provide sets of recommended parameters, generate sorted output...1601 days ago
Nextflow: Data-driven computational pipelines
...uent DSL simplifies the implementation and the deployment of complex parallel and reactive workflows on clouds and clusters. More at https://github.com/nextflow-io/nextflow...1599 days ago
Juicebox: Visualization and analysis software for Hi-C data
Juicebox is visualization software for Hi-C data. This distribution includes the source code for Juicebox, Juicer Tools, and Assembly Tools. Download Jui...1598 days ago