RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of meta...p;Nucleic Acids Research April 4, 2012. If you have any questions or bug reports, please let us know at <be...2406 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wik...ith features for the assembly of large and complex genomes.Song Gao, Denis Bertrand, Bu...exact scaffolding of large, repeat-rich eukaryotic genomes...2406 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has been postulated as...able that we used for sequencing the S. cerevisiae genome. To make use of these data, w...ore complete representation of the features of the genome...2404 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave the c...uantitative approaches for comparing and analyzing genomes starting from raw sequencing...e across the tree of life. The topics will include genome...2404 days ago
2404 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
Ribbon can be used for long reads, short reads, paired-end reads, and assembly/genome alignments. Instructions for each data format are available by clicking on "instructions" in each tab on th...2404 days ago
Scripts for the analysis of HGT in genome sequence data.
Scripts for the analysis of HGT in genome sequence data2404 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline design...t is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome...2401 days ago
2393 days ago
Bandage: interactive visualization of de novo genome assemblies
Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for visualizing assembly graphs with connections. Users ca...2399 days ago