QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
Data on protein-drug and protein-chemical interactions are rapidly accumulating in databases such as DrugBank&n...ty of both proteins and small molecules: many drugs have side effects i.e. they targ...1554 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
Dahak is a software suite that integrates state-of-the-art open source tools for metag...tagenome assembly, taxonomic and functional classification, genome binning, and gene assignment. We aim to deliver...1546 days ago
CSAR-web: a web server of contig scaffolding using algebraic rearrangements
CSAR-web is a web-based tool that allows the users to efficiently and accurately scaffold (i.e. order and orient) the contigs of a targ...1545 days ago
1543 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron an...to train and to assess the prediction accuracy of computational approaches for gene identification and characteri...1482 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT)...both known and (highly) unknown microorganisms, as generated by contemporary metageno...udies. The core algorithm of both programs involves gene calling, mapping of predicted...1507 days ago
SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
SynVisio lets you explore the resul...nearity detection toolkit and generate publication ready images....e collinearity file generated as an output by McScanX...dgraph format to annotate the generated charts. SynVisio offe...hen choose the source and the target chromosomes that need to be...1494 days ago
gggenes: a ggplot2 extension for drawing gene arrow maps.
Install the stable version of gggenes from CRAN: install.packages("gggenes") If you want the development version, install it from GitHub: devtools::install_github("wilkox/gggenes") More at https://github.com/wilkox/gggenes1492 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
2/3/2020: Now published by Bioinformatics. 11/3/2019...fungal genomes based on STRING-db! Just paste your gene list to get enriched GO terms...n, it also produces KEGG pathway diagrams with your genes highlighted, hierarchical cl...1491 days ago
1475 days ago